WebSafe 3.7pubmed.ncbi.nlm.nih.gov
|
|
🏠
Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2016 Sep 30;17(3):299-306.
doi: 10.4142/jvs.2016.17.3.299.

Molecular characterization of highly pathogenic avian influenza H5N8 viruses isolated from Baikal teals found dead during a 2014 outbreak in Korea

Affiliations

Molecular characterization of highly pathogenic avian influenza H5N8 viruses isolated from Baikal teals found dead during a 2014 outbreak in Korea

Seol-Hee Kim et al. J Vet Sci. .

Abstract

Nineteen highly pathogenic avian influenza (HPAI) H5N8 viruses were isolated from wild birds in the Donglim reservoir in Gochang, Jeonbuk province, Korea, which was first reported to be an outbreak site on January 17, 2014. Most genes from the nineteen viruses shared high nucleotide sequence identities (i.e., 99.7% to 100%). Phylogenetic analysis showed that these viruses were reassortants of the HPAI H5 subtype and the H4N2 strain and that their hemagglutinin clade was 2.3.4.4, which originated from Eastern China. The hemagglutinin protein contained Q222 and G224 at the receptor-binding site. Although the neuraminidase protein contained I314V and the matrix 2 protein contained an S31N substitution, other mutations resulting in oseltamivir and amantadine resistance were not detected. No substitutions associated with increased virulence and enhanced transmission in mammals were detected in the polymerase basic protein 2 (627E and 701D). Non-structural-1 was 237 amino acids long and had an ESEV motif with additional RGNKMAD amino acids in the C terminal region. These viruses caused deaths in the Baikal teal, which was unusual, and outbreaks occurred at the same time in both poultry and wild birds. These data are helpful for epidemiological understanding of HPAI and the design of prevention strategies.

Keywords: H5N8; avian influenza; phylogenetic analysis; surveillance; wild bird.

PubMed Disclaimer

Conflict of interest statement

There is no conflict of interest.

Figures

Fig. 1
Fig. 1. Waterfowl distribution during the HPAI H5N8 outbreak in Korea based on a survey conducted by the National Institute of Biological Resources from January 21–23, 2014. Light blue circles indicate Donglim reservoir. (A) Distribution of Baikal teal (yellow). (B) Distribution of spot-billed duck (orange), mallard (blue), bean goose (light green) and common coot (purple). (C) Sampling region of Donglim reservoir (dashed circle).
Fig. 2
Fig. 2. Neighbor-joining phylogenetic tree for the H5 gene (nucleotide positions: 49–1649). The black circle (●) indicates the genes of isolates from this study. The percentages of replicate trees in which the associated taxa clustered together in the bootstrap test (1,000 replicates) are shown next to the branches.
Fig. 3
Fig. 3. Neighbor-joining phylogenetic tree of N8 gene (nucleotide positions: 31–1374). The black circle (●) identifies the genes of isolates used in this study. The percentages of replicate trees in which the associated taxa clustered together in the bootstrap test (1,000 replicates) are shown next to the branches.

References

    1. Chan CH, Lin KL, Chan Y, Wang YL, Chi YT, Tu HL, Shieh HK, Liu WT. Amplification of the entire genome of influenza A virus H1N1 and H3N2 subtypes by reverse-transcription polymerase chain reaction. J Virol Methods. 2006;136:38–43. - PubMed
    1. Clark L, Hall J. Avian influenza in wild birds: status as reservoirs, and risks to humans and agriculture. Ornithol Monogr. 2006;60:3–29.
    1. Gu M, Zhao G, Zhao K, Zhong L, Huang J, Wan H, Wang X, Liu W, Liu H, Peng D, Liu X. Novel variants of clade 2.3.4 highly pathogenic avian influenza A (H5N1) viruses, China. Emerg Infect Dis. 2013;19:2021–2024. - PMC - PubMed
    1. Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 2012;28:1647–1649. - PMC - PubMed
    1. Kim HR, Lee YJ, Park CK, Oem JK, Lee OS, Kang HM, Choi JG, Bae YC. Highly pathogenic avian influenza (H5N1) outbreaks in wild birds and poultry, Korea. Emerg Infect Dis. 2012;18:480–483. - PMC - PubMed